![]() ![]() The checkbox “Pixel units” is equivalent to the checkbox with the same label in the standard IJ Analyze Particels… function and uses pixels instead of calibrated units to limit the analysis with the respective parameters. The new version from 11th February 2018 (included from BioVoxxel_Plugins-2.0.1) on contains 2 checkboxes which enable the choice between pixel and calibrated units in images which are spatially calibrated. Shape descriptors which are not available under “Analyze Particles…” in IJ or Fiji so far are:Įxtent = / Ĭompactness = / įeret’s AR = / Ĭoefficient of variance (CoV) = / Tipp: use the “Shape Descriptor Maps” macro to figure out possible cut-off value combinations for your analysis which you can then use in the Extended Particle Analyzer. This corrects the particle count for edge touching particles. The option “Keep borders (correction)” eliminates particles from 2 edges and keeps particles touching the two borders of choice. “Redirect” redirects the analysis to a grayscale image which enables to analyze skewness, kurtosis as well as the new measure coefficient of variance (cov). You can use integers as well as numbers containing decimal places. How to: Key in minimal and maximal exclusion values connected with a hyphen. The output types are the same as for the Analyze › Analyze Particles.Įxample: If you want to extract/analyze only particles with a certain Feret’s Angle or exclude elongated structures using the aspect ratio (AR) or circularity you can specify so in the initial dialog box. Thus, setting minimal and maximal exclusion ranges of different parameters enables to extract particles from a binary image. It enables the user to further restrict the analysis on particles according to many more parameter spezifications of shape descriptors and angle orientations. Purpose: The “Extended Particle Analyzer” is based on the ImageJ “Analyze Particles…” command. The BioVoxxel Figure Tools can be cited separately from the toolbox plugins as follows: If you find those functions helpful and use it to generate results you publish, please consider to cite: ![]() You will find all functions of the BioVoxxel Toolbox under the icon of the green BioVoxxel cube after selecting BioVoxxel Toolbox from the More Tools Icon (last Icon in the ImageJ/Fiji Icon list with the double arrow). If you’d like to help, check out the how to help guide! ![]() Hidden object handles are still valid.The content of this page has not been vetted since shifting away from MediaWiki. Get, findobj, gca, gcf, gco, newplot, cla, clf, and close functions. If the object is not listed in the Children property of the parent, thenįunctions that obtain object handles by searching the object hierarchy or querying This optionīlocks access to the object at the command line, but permits This option is useful for preventing unintendedįrom within callbacks or functions invoked by callbacks, but notįrom within functions invoked from the command line. Otherwise, use the gcbo function to access the object.Īll times. If you specify this property as a function handle or cell array, you can access the object that is being created using the first argument of the callback function. Setting the CreateFcn property on an existing component has no effect. If you do not specify the CreateFcn property, then MATLAB executes a default creation function. MATLAB initializes all property values before executing the CreateFcn callback. This property specifies a callback function to execute when MATLAB creates the object. MATLAB evaluates this expression in the base workspace.įor more information about specifying a callback as a function handle, cell array, or character vector, see Create Callbacks for Graphics Objects. Subsequent elements in the cell array are the arguments to pass to the callback function.Ĭharacter vector containing a valid MATLAB expression (not recommended). Cell array in which the first element is a function handle. ![]()
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